Published
​Habitat selection and 3D space use partitioning of resident juvenile hawksbill sea turtles in a small Caribbean bay

Matley, J.K., Johansen, L., Klinard, N.V., Eanes, S., and Jobsis, P.D. (2021) Marine Biology
Movement patterns of juvenile Atlantic tarpon (Megalops atlanticus) in Brewers Bay, St. Thomas, US Virgin Islands 

Duffing Romero, M.D., Matley, J.K., Ault, J.S., Luo, J., Pittman, S., Nemeth, R.S. (2021) Animal Biotelemetry. 9:16 
Using untapped biotelemetry data to explore the winter biology of freshwater fish
Marsden, J.E., Blanchfield, P., Brooks, J., Fernandes, T., Fisk, A., Futia, M., Hlina, B., Ivanova, S., Johnson, T., Klinard, N.V., Krueger, C., Larocque, S., Matley, J.K., McMeans, B., O’Connor, L., Raby, G., and Cooke, S. (2021) Reviews in Fish Biology and Fisheries. ​31: 115-134 
Performance of acoustic telemetry in relation freshwater submerged aquatic vegetation
Weinz, A.A., Matley, J.K., Klinard, N.V., Fisk, A.T., and Colborne, S.C. (2021) Marine and Freshwater Research. 72: 1033-1044  
Application of machine learning to identify predators of stocked fish in Lake Ontario: using acoustic telemetry predation tags to inform management
Klinard, N.V., Matley, J.K., Ivanova S.V., Larocque, S.M., Fisk, A.T., Johnson, T.B. (2020) Journal of Fish Biology. ​98: 237-250 
Environmental drivers of diving behavior and space-use of the endangered Caribbean juvenile hawksbill sea turtle (Eretmochelys imbricata) identified using acoustic telemetry
Matley, J.K., Jossart J., Johansen L., Jobsis P.D. (2020) ​Marine Ecology Progress Series. 652: 157-171
Identification of predation events in the wild using acoustic transmitters
Weinz, A.A., Matley, J.K., Klinard, N.V., Fisk, A.T., and Colborne, S.C. (2020) Animal Biotelemetry. 8: 28 
Living until proven dead: Addressing mortality in acoustic telemetry research
Klinard, N.V., Matley, J.K. (2020) Reviews in Fish Biology and Fisheries. 30: 485-499
Seasonal habitat-use differences among Lake Erie’s walleye stocks
Matley, J.K., Faust, M.D., Raby, G.D., Zhao, Y., Robinson, J., Macdougall, T., Hayden, T.A., Fisk A.T., Vandergoot, C.S., Krueger, C.C. (2020) ​Journal of Great Lakes Research. 46: 609-621 
Post-stocking movement and survival of hatchery-reared bloater (Coregonus hoyi) reintroduced to Lake Ontario
Klinard, N.V., Matley, J.K., Halfyard, E.A., Connerton, M., Johnson, T.B., and Fisk, A.T. (2020) Freshwater Biology. 65: 1073-1085 
​Long-term retention of acoustic telemetry transmitters in temperate predators revealed by predation tags implanted in wild prey fish
Klinard, N.V., Matley, J.K., Fisk, A.T., and Johnson, T.B. (2019) Journal of Fish Biology. 95: 1512-1516 
Vulnerability of sea turtles and fishes in response to two catastrophic Caribbean hurricanes, Irma and Maria
Matley, J.K., Eanes, S., Nemeth, R.S., Jobsis, P.D. (2019) Scientific Reports. 9: 1-15 
The influence of dynamic environmental interactions on detection efficiency of acoustic transmitters in a large, deep, freshwater lake
Klinard, N.V., Halfyard, E.A., Matley, J.K., Fisk, A.T., and Johnson, T.B. (2019) Animal Biotelemetry. 7(17) 
Multi-tissue stable isotope analysis reveals resource partitioning and trophic relationships of large reef-associated predators
Espinoza, M., Matley, J.K., Heupel, M.R., Tobin, A.J., Fisk, A.T., Simpfendorfer, C.S. (2019) Marine Ecology Progress Series. 615: 159-176 
Latitudinal and seasonal variation in home range by a large, predatory reef fish, Plectropomus leopardus
Scott, M., Heupel, M.R., Simpfendorfer, C.S., Matley, J.K., Pratchett, M. (2019) Functional Ecology. 33: 670-680
Stable isotope analysis reveals trophic diversity and partitioning in territorial damselfishes on a low latitude coral reef
Eurich, J.G., Matley, J.K., Baker, R., McCormick, M.I., Jones, G.P. (2019) Marine Biology. 166:17
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​Shark Research: Emerging Technologies and Applications for the Field and Laboratory

Chapter 9: Acoustic Telemetry
Heupel, M.R., Kessel, S., Matley, J.K., Simpfendorfer, C.A. (2018) Carrier, Heithaus, Simpfendorfer (eds). CRC Press, Florida, 392 pp.
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Inte​grating complementary methods to improve diet analysis in fishery‐targeted species
Matley, J.K., Maes, G.E., Devloo-Delva, F., Huerlimann, R., Chua, G., Tobin, A.J., Fisk, A.T., Simpfendorfer, C.A., Heupel, M.R. (2018) Ecology and Evolution. 1-37
Ocean warming has greater and more consistent negative effects than ocean acidification on the growth and health of subtropical macroalgae
Graba-Landry, A., Hoey, A.S., Matley, J.K., Sheppard-Brennand, H., Poore, A.G.B., Byrne, M., Dworjanyn, S.A. (2018) Marine Ecology Progress Series. 595: 55-69
How does marker choice affect your diet analysis? Comparing genetic markers and digestion levels for diet metabarcoding of tropical reef piscivores
Devloo-Delva, F., Huerlimann, R., Chua, G., Matley, J.K., Heupel, M.R., Simpfendorfer, C.A., Maes, G.E. (2018) Marine and Freshwater Research
Trophic niche and spatio-temporal changes in the feeding ecology of two sympatric species of coral trout (Plectropomus leopardus and P. laevis)
Matley, J.K., Tobin, A.J., Simpfendorfer, C.A., Fisk, A.T., Heupel, M.R. (2017) Marine Ecology Progress Series 563:197-210 
Contrasting patterns of vertical and horizontal space use of two exploited and sympatric coral reef fish
Matley, J.K., Tobin, A.J., Lédée, E.J.I., Heupel, M.R., Simpfendorfer, C.A. (2016) Marine Biology 163:253
Niche overlap between co-ccurring Plectropomus spp. using acoustic telemetry and stable isotopes
Matley, J.K., Heupel, M.R., Fisk, A.T., Simpfendorfer, C.A., Tobin, A.J. (2016) Marine and Freshwater Research​
Diet-tissue discrimination factors and turnover of carbon and nitrogen stable isotopes in tissues of an adult predatory coral reef fish, Plectropomus leopardus
Matley, J.K., Fisk, A.T., Tobin, A.J., Heupel, M.R., and Simpfendorfer, C.A. (2016) Rapid Communications in Mass Spectrometry 30: 29-44
From Science to Policy in the Western and Central Canadian Arctic: An Integrated Regional Impact Study (IRIS) of Climate Change and Modernization
Chapter 4. Arctic Change: Impacts on Marine Ecosystems and Contaminants
Fortier, L. , Reist, J.D. , Ferguson S.H. , Archambault, P., Matley, J., and Macdonald, R.W. (2015) ArcticNet, Quebec City, 432 pp.

Depth and space use of leopard coralgrouper (Plectropomus leopardus) using passive acoustic tracking

Matley, J.K., Heupel, M.R., and Simpfendorfer, C.A. (2015) Marine Ecology Progress Series 521: 201-216

Foraging ecology of ringed seals, beluga whales, and narwhals in the Canadian high Arctic determined by stomach content and stable isotope analysis

Matley, J.K., Fisk, A.T., and Dick, T.A. (2015) Polar Research 35, 24295

The foraging ecology of Arctic cod (Boreogadus saida) during open water (July-August) in Allen Bay, Arctic Canada

Matley, J.K., Fisk, A.T., and Dick, T.A. (2013) Marine Biology 160: 2993-3004
Seabird predation on Arctic cod during summer in the Canadian Arctic
Matley, J.K., Fisk, A.T., and Dick, T.A. (2012) Marine Ecology
 Progress Series 450: 219-228
Matley, J.K., Crawford, R., and Dick, T.A. (2012)  
Polar Research 31, 15894
Observation of common raven (Corvus corax) scavenging Arctic cod (Boreogadus saida) from seabirds in the Canadian High Arctic
Matley, J.K., Crawford, R., and Dick, T.A. (2012)  Polar Biology 35: 1119-1122